Resources


Database Credentialed Access

CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jasmine Teng, Joanne Teh, Leon Worth, Monica Slavin, karin thursky, Karin Verspoor

A corpus of cytology and histopathology reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.

nlp information extraction clinical documentation invasive fungal infections

Published: Feb. 20, 2024. Version: 1.0.2

Database Credentialed Access

Medication Extraction Labels for MIMIC-IV-Note Clinical Database

Akshay Goel, Almog Gueta, Omry Gilon, Sofia Erell, Amir Feder

Medication extraction NLP labels for 600 discharge summaries in MIMIC-IV-Note dataset.

Published: Dec. 12, 2023. Version: 1.0.0

Challenge Open Access

Heart Murmur Detection from Phonocardiogram Recordings: The George B. Moody PhysioNet Challenge 2022

Matthew Reyna, Yashar Kiarashi, Andoni Elola, Jorge Oliveira, Francesco Renna, Annie Gu, Erick Andres Perez Alday, Nadi Sadr, Sandra Mattos, Miguel Coimbra, Reza Sameni, Ali Bahrami Rad, Zuzana Koscova, Gari Clifford

2022 Physionet Challenge is devoted to detecting the presence or absence of murmurs from multiple heart sound recordings from multiple auscultation locations, as well as detecting the clinical outcomes.

challenge competition cardiac auscultation congenital heart diseases

Published: Sept. 28, 2023. Version: 1.0.0

Database Open Access

BIG IDEAs Lab Glycemic Variability and Wearable Device Data

Peter Cho, Juseong Kim, Brinnae Bent, Jessilyn Dunn

Glucose measurements and wrist-worn wearable sensor data from highnormoglycemic participants.

biomedical engineering pre-diabetes biomarkers

Published: Sept. 18, 2023. Version: 1.1.2

Database Open Access

Heart and lung segmentations for MIMIC-CXR/MIMIC-CXR-JPG and Montgomery County TB databases

Benjamin Duvieusart, Felix Krones, Guy Parsons, Lionel Tarassenko, Bartlomiej W Papiez, Adam Mahdi

Heart and lung segmentations for 200 MIMIC-CXR/MIMIC-CXR-JPG chest x-rays and heart segmentations for 138 Montgomery County tuberculosis chest X-rays.

segmentation heart and lungs montgomery country tb mimic-cxr

Published: Aug. 14, 2023. Version: 1.0.0

Database Open Access

Electroencephalogram and eye-gaze datasets for robot-assisted surgery performance evaluation

Somayeh B Shafiei, Saeed Shadpour, James Mohler, Mehdi Seilanian Toussi, Philippa Doherty, Zhe Jing

The brain activity and eye gaze data were recorded from 25 participants performing surgical tasks using a robot simulator. The performance score was created by the simulator. Data can be used to evaluate surgical performance.

Published: July 14, 2023. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

Annotated MIMIC-IV discharge summaries for a study on deidentification of names

Shulammite Lim, Yuxin Xiao, Alistair Johnson, Dana Moukheiber, Lama Moukheiber, Mira Moukheiber, Marzyeh Ghassemi, Tom Pollard

Annotated MIMIC-IV discharge summaries used to explore deidentification of names

deidentification fairness

Published: July 5, 2023. Version: 1.0

Database Credentialed Access

MIMICEL: MIMIC-IV Event Log for Emergency Department

Jia Wei, Zhipeng He, Chun Ouyang, Catarina Moreira

MIMIC-IV Event Log for Emergency Department

Published: June 16, 2023. Version: 2.1.0

Database Credentialed Access

Generalized Image Embeddings for the MIMIC Chest X-Ray dataset

Andrew Sellergren, Atilla Kiraly, Tom Pollard, Wei-Hung Weng, Yun Liu, Akib Uddin, Christina Chen

This database contains compact information-rich embeddings of the MIMIC-CXR Database v2.0.0 using the CXR Foundation API v1.0.

Published: Feb. 22, 2023. Version: 1.0

Database Credentialed Access

Chest X-ray Dataset with Lung Segmentation

Wimukthi Indeewara, Mahela Hennayake, Kasun Rathnayake, Thanuja Ambegoda, Dulani Meedeniya

CXLSeg dataset: Chest X-ray with Lung Segmentation, a comparatively large dataset of segmented Chest X-ray radiographs based on the MIMIC-CXR dataset. This contains segmentation results of 243,324 frontal view images and corresponding masks.

segmentation chest x-ray medical reports u-net chest radiographs mimic-cxr

Published: Feb. 8, 2023. Version: 1.0.0