Resources
Database Credentialed Access
Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization
Yanjun Gao, John Caskey, Timothy Miller, Brihat Sharma, Matthew Churpek, Dmitriy Dligach, Majid Afshar
Published: Sept. 30, 2022. Version: 1.0.0
Database Credentialed Access
Learning to Ask Like a Physician: a Discharge Summary Clinical Questions (DiSCQ) Dataset
Eric Lehman
machine learning question generation question answering
Published: July 28, 2022. Version: 1.0
Model Credentialed Access
Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes
Eric Lehman, Sarthak Jain, Karl Pichotta, Yoav Goldberg, Byron Wallace
Published: April 28, 2021. Version: 1.0.0
Database Credentialed Access
AMR-UTI: Antimicrobial Resistance in Urinary Tract Infections
Michael Oberst, Soorajnath Boominathan, Helen Zhou, Sanjat Kanjilal, David Sontag
antibiotic resistance causal inference policy learning antimicrobial resistance urinary tract infection clinical decision support machine learning
Published: Nov. 4, 2020. Version: 1.0.0
Database Credentialed Access
MIMIC-III - SequenceExamples for TensorFlow modeling
Jonas Kemp, Kun Zhang, Andrew Dai
tensorflow sequence modeling machine learning deep learning
Published: Sept. 29, 2020. Version: 1.0.0
Database Credentialed Access
Phenotype Annotations for Patient Notes in the MIMIC-III Database
Edward Moseley, Leo Anthony Celi, Joy Wu, Franck Dernoncourt
patient classification natural language processing
Published: March 5, 2020. Version: 1.20.03
Model Credentialed Access
What's in a Note? Unpacking Predictive Value in Clinical Note Representations
Tristan Naumann, William Boag
Published: Jan. 7, 2018. Version: 0.1
Database Open Access
Clinical data from the MIMIC-II database for a case study on indwelling arterial catheters
Jesse Raffa
Published: Oct. 28, 2016. Version: 1.0
Database Credentialed Access
MIMIC-IV-ED
Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Leo Anthony Celi, Roger Mark, Steven Horng
mimic emergency department ed emergency mimic-iv electronic health record
Published: Jan. 5, 2023. Version: 2.2
Database Credentialed Access
MIMIC-IV-Note: Deidentified free-text clinical notes
Alistair Johnson, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark
deidentification mimic critical care natural language processing clinical notes electronic health record
Published: Jan. 6, 2023. Version: 2.2