function BEST_DATA=COMB_classification(R,IHD,time_series_names,MD_DATA_D,MD_DATA_DD,MD_DATA,DESCRIPTORS,des_names) num_params=size(R,2); DATA=zeros(size(R,1),3); include=zeros(size(R,2),1); for par_idx=1:num_params X=R(:,par_idx); B = mnrfit(X,IHD+1); PHAT = mnrval(B,X); max_score1=0; max_score2=0; best_th=0; for class_th=.1:.01:0.5 DATA(:,1)=str2double('0000'); DATA(:,2)=PHAT(:,2); DATA(:,3)=PHAT(:,2)> class_th; DATA(DATA(:,2)<0.01,2)=0.01; DATA(DATA(:,2)>0.99,2)=0.99; % if(~isempty(results)) % Calculate sensitivity (Se) and positive predictivity (PPV) TP=sum(DATA(IHD==1,3)); FN=sum(~DATA(IHD==1,3)); FP=sum(DATA(IHD==0,3)); Se=TP/(TP+FN); PPV=TP/(TP+FP); show=0; % if show is 1, the decile graph will be displayed by lemeshow() H=lemeshow([IHD DATA(:,2)],show); % Use the title of figure to display the results title(['H= ' num2str(H) ' Se= ' num2str(Se) ' PPV= ' num2str(PPV) '. ' num2str(class_th) ]) % The event 1 score is the smaller of Se and PPV. score1 = min(Se, PPV); if score1>max_score1 max_score1=score1; best_th=class_th; max_score2=H; % display(['Unofficial Event 1 score: ' num2str(score1)]); end % end end survivals1=sum(X==1 & IHD==0); deaths1=sum(X==1 & IHD==1); survivals2=sum(X==0 & IHD==0); deaths2=sum(X==0 & IHD==1); if max_score1>0 % include(par_idx)=1; disp(' ---') disp([' non NaNs:' num2str(deaths1/(deaths1+survivals1)) ]) disp([' NaNs:' num2str(deaths2/(deaths2+survivals2)) ]) ratio=(deaths1/(deaths1+survivals1)) / (deaths2/(deaths2+survivals2)) name= time_series_names{par_idx} score= max_score1 disp(' ---') if ratio >1.5 || ratio <0.6 include(par_idx)=1; end end end num_params=size(R,2); DATA=zeros(size(R,1),3); %for par_idx=1:num_params X1=R(:,include==1); min_numdata1=min(sum(~isnan(MD_DATA_D),2)); min_numdata2=min(sum(~isnan(MD_DATA_DD),2)); MD_DATA_D=MD_DATA_D(:,1:min_numdata1); MD_DATA_DD=MD_DATA_DD(:,1:min_numdata2); X2=[MD_DATA_D MD_DATA_DD MD_DATA]; AGE_a=DESCRIPTORS(:,strcmp(des_names,'Age')); Gender_a=DESCRIPTORS(:,strcmp(des_names,'Gender')); ICUTYPE_a=[DESCRIPTORS(:,strcmp(des_names,'ICUType'))]; ICUTYPE_t=ICUTYPE_a; ICUTYPE_a(ICUTYPE_t==1)=2; ICUTYPE_a(ICUTYPE_t==2)=4; ICUTYPE_a(ICUTYPE_t==3)=1; ICUTYPE_a(ICUTYPE_t==4)=3; X2=[AGE_a ICUTYPE_a X2]; X=[X1 X2]; %0.2708 %X=[R(:,~strcmp(time_series_names,'MechVent'))]; %0.277 % X=[R(:,strcmp(time_series_names,'TroponinT'))]; % X=[R(:,strcmp(time_series_names,'TroponinI')) X]; % X=[R(:,strcmp(time_series_names,'RespRate')) X]; % X=[R(:,strcmp(time_series_names,'Mg')) X]; % X=[R(:,strcmp(time_series_names,'Lactate')) X]; % X=[R(:,strcmp(time_series_names,'K')) X]; % X=[R(:,strcmp(time_series_names,'FiO2')) X]; % X=[R(:,strcmp(time_series_names,'Bilirubin')) X]; % X=[R(:,strcmp(time_series_names,'AST')) X]; % X=[R(:,strcmp(time_series_names,'ALT')) X]; % X=[R(:,strcmp(time_series_names,'ALP')) X]; % X=[R(:,strcmp(time_series_names,'Albumin')) X]; % B = mnrfit(X,IHD+1); PHAT = mnrval(B,X); max_score1=0; max_score2=0; best_th=0; for class_th=.1:.01:0.5 DATA(:,1)=str2double('0000'); DATA(:,2)=PHAT(:,2); DATA(:,3)=PHAT(:,2)> class_th; DATA(DATA(:,2)<0.01,2)=0.01; DATA(DATA(:,2)>0.99,2)=0.99; % if(~isempty(results)) % Calculate sensitivity (Se) and positive predictivity (PPV) TP=sum(DATA(IHD==1,3)); FN=sum(~DATA(IHD==1,3)); FP=sum(DATA(IHD==0,3)); Se=TP/(TP+FN); PPV=TP/(TP+FP); show=0; % if show is 1, the decile graph will be displayed by lemeshow() H=lemeshow([IHD DATA(:,2)],show); % Use the title of figure to display the results title(['H= ' num2str(H) ' Se= ' num2str(Se) ' PPV= ' num2str(PPV) '. ' num2str(class_th) ]) % The event 1 score is the smaller of Se and PPV. score1 = min(Se, PPV); if score1>max_score1 max_score1=score1; best_th=class_th; max_score2=H; BEST_DATA=DATA; % display(['Unofficial Event 1 score: ' num2str(score1)]); end % end end % survivals1=sum(X==1 & IHD==0); % deaths1=sum(X==1 & IHD==1); % survivals2=sum(X==0 & IHD==0); % deaths2=sum(X==0 & IHD==1); % % disp([' non NaNs:' num2str(deaths1/(deaths1+survivals1)) ]) % disp([' NaNs:' num2str(deaths2/(deaths2+survivals2)) ]) % max_score1 end