Resources
Database Credentialed Access
EchoNotes Structured Database derived from MIMIC-III (ECHO-NOTE2NUM)
Gloria Hyunjung Kwak, Dana Moukheiber, Mira Moukheiber, Lama Moukheiber, Sulaiman Moukheiber, Neel Butala, Leo Anthony Celi, Christina Chen
Published: Feb. 23, 2024. Version: 1.0.0
Database Credentialed Access
CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports
Vlada Rozova, Anna Khanina, Jasmine Teng, Joanne Teh, Leon Worth, Monica Slavin, karin thursky, Karin Verspoor
nlp information extraction clinical documentation invasive fungal infections
Published: Feb. 20, 2024. Version: 1.0.2
Database Credentialed Access
MIMIC-IV on FHIR
Alex Bennett, Joshua Wiedekopf, Hannes Ulrich, Philip van Damme, Alistair Johnson
mimic-iv fhir electronic health record
Published: Feb. 20, 2024. Version: 1.0
Database Credentialed Access
CORAL: expert-Curated medical Oncology Reports to Advance Language model inference
Madhumita Sushil, Vanessa Kennedy, Divneet Mandair, Brenda Miao, Travis Zack, Atul Butte
artificial intelligence electronic health records information extraction natural language processing large language models oncology
Published: Feb. 7, 2024. Version: 1.0
Database Open Access
A Multi-Modal Satellite Imagery Dataset for Public Health Analysis in Colombia
Sebastian A Cajas, David Restrepo, Dana Moukheiber, Kuan Ting Kuo, Chenwei Wu, David Santiago Garcia Chicangana, Atika Rahman Paddo, Mira Moukheiber, Lama Moukheiber, Sulaiman Moukheiber, Saptarshi Purkayastha, Diego M Lopez, Po-Chih Kuo, Leo Anthony Celi
multimodality satellite imagery
Published: Jan. 30, 2024. Version: 1.0.0
Database Credentialed Access
RadCoref: Fine-tuning coreference resolution for different styles of clinical narratives
Yuxiang Liao, Hantao Liu, Irena Spasic
radiology natural language processing coreference resolution
Published: Jan. 30, 2024. Version: 1.0.0
Database Credentialed Access
Annotation dataset of social determinants of health from MIMIC-III Clinical Care Database
Marco Guevara, Shan Chen, Spencer Thomas, Danielle Bitterman
natural language processing social determinants of health
Published: Jan. 24, 2024. Version: 1.0.1
Database Open Access
A Comprehensive Dataset of Pattern Electroretinograms for Ocular Electrophysiology Research: The PERG-IOBA Dataset
Itziar Fernández, Ruben Cuadrado Asensio, Yolanda Larriba, Cristina Rueda, Rosa M Coco-Martin
Published: Jan. 19, 2024. Version: 1.0.0
Database Credentialed Access
ODD: A Benchmark Dataset for the NLP-based Opioid Related Aberrant Behavior Detection
Sunjae Kwon, Xun Wang, Weisong Liu, Emily Druhl, Minhee Sung, Joel Reisman, Wenjun Li, Robert Kerns, William Becker, Hong Yu
natural language processing substance use opioid related aberrant behavior
Published: Jan. 11, 2024. Version: 1.0.0
Database Credentialed Access
EHR-DS-QA: A Synthetic QA Dataset Derived from Medical Discharge Summaries for Enhanced Medical Information Retrieval Systems
Konstantin Kotschenreuther
mimic-iv large language models clinical question-answering medical discharge summaries
Published: Jan. 11, 2024. Version: 1.0.0