Respiratory dataset from PEEP study with expiratory occlusion 1.0.0

%% Raw Data conversion from .mat to .csv
% Ella Guy 
% Last Updated: 29MAY2023

clear all, close all, clc

% Load Data
%--------------------------------------------------------------------------
% Inputs-------------------------------------------------------------------
for SubjectNumber = 1:80      % de-identifyed subject number
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
%% Raw

BOB_infile_format_raw = 'PQ_rawData/Subject%d_raw.mat';
BOB_infile_raw = sprintf(BOB_infile_format_raw, SubjectNumber);

load(BOB_infile_raw)

% BOB_infile_raw:
% 'time' - time [s]
% 'GaugeP_ADC' - Gauge pressure
% 'InhaleP_ADC' - Inspiratory differenrtial pressure
% 'ExhaleP_DC' - Expiratory differenrtial pressure
% 'Chest_counts' - Chest circumference
% 'Abd_counts' - Abdominal circumference
% 'Depth_chest' - Chest crossectional depth [mm]
% 'Width_chest' - Chest crossectional width [mm]

%%

csv_outfile_format_raw = 'PQ_rawData/Subject%d_raw.csv';
csv_outfile_name_raw = sprintf(csv_outfile_format_raw, SubjectNumber);

Output_raw = zeros(length(time), 8);

Output_raw(:,1) = time;
Output_raw(:,2) = GaugeP_ADC;
Output_raw(:,3) = InhaleP_ADC;
Output_raw(:,4) = ExhaleP_ADC;
Output_raw(:,5) = Chest_counts;
Output_raw(:,6) = Abd_counts;
Output_raw(1,7) = Depth_chest;
Output_raw(1,8) = Width_chest;


OutputTable_raw = array2table(Output_raw);
OutputTable_raw.Properties.VariableNames(1:8) = {'Time [s]', ...
    'Gauge Pressure', 'Inspiratory differenrtial pressure', 'Expiratory differenrtial pressure', ...
    'Chest circumference', 'Abdominal circumference', ...
    'Chest crossectional depth [mm]', 'Chest crossectional width [mm]'};
            writetable(OutputTable_raw, csv_outfile_name_raw)

writetable(OutputTable_raw, csv_outfile_name_raw)

%% With Processed Units 

BOB_infile_format = 'PQ_rawData/AprilTrial2023_Subject%d.mat';
BOB_infile = sprintf(BOB_infile_format, SubjectNumber);

load(BOB_infile)

% BOB_infile_raw:
% 'time' - time [s]
% 'GaugeP' - Gauge pressure [cmH2O]
% 'InhaleDeltaP' - Inspiratory differenrtial pressure [cmH2O]
% 'ExhaleDeltaP' - Expiratory differenrtial pressure [cmH2O]
% 'Chest' - Chest circumference [mm]
% 'Abd' - Abdominal circumference [mm]
% 'Depth_chest' - Chest crossectional depth [mm]
% 'Width_chest' - Chest crossectional width [mm]

%%

csv_outfile_format = 'PQ_rawData/Subject%d.csv';
csv_outfile_name = sprintf(csv_outfile_format, SubjectNumber);

Output = zeros(length(time), 8);

Output(:,1) = time;
Output(:,2) = GaugeP;
Output(:,3) = InhaleDeltaP;
Output(:,4) = ExhaleDeltaP;
Output(:,5) = Chest;
Output(:,6) = Abd;
Output(1,7) = Depth_chest;
Output(1,8) = Width_chest;


OutputTable = array2table(Output);
OutputTable.Properties.VariableNames(1:8) = {'Time [s]', ...
    'Gauge Pressure [cmH2O]', 'Inspiratory differenrtial pressure [cmH2O]', 'Expiratory differenrtial pressure [cmH2O]', ...
    'Chest circumference [mm]', 'Abdominal circumference [mm]', ...
    'Chest crossectional depth [mm]', 'Chest crossectional width [mm]'};
            writetable(OutputTable, csv_outfile_name)

writetable(OutputTable, csv_outfile_name)

end