Predicting Mortality of ICU Patients: The PhysioNet/Computing in Cardiology Challenge 2012 1.0.0

function [X, fX, i, XX] = minimize(X, f, length, P1, P2, P3, P4, P5, P6, P7)

% Written by Carl E. Rasmussen 


% Minimize a continuous differentialble multivariate function. Starting point
% is given by "X" (D by 1), and the function named in the string "f", must
% return a function value and a vector of partial derivatives. The Polack-
% Ribiere flavour of conjugate gradients is used to compute search directions,
% and a line search using quadratic and cubic polynomial approximations and the
% Wolfe-Powell stopping criteria is used together with the slope ratio method
% for guessing initial step sizes. Additionally a bunch of checks are made to
% make sure that exploration is taking place and that extrapolation will not
% be unboundedly large. The "length" gives the length of the run: if it is
% positive, it gives the maximum number of line searches, if negative its
% absolute gives the maximum allowed number of function evaluations. The
% function returns when either its length is up, or if no further progress can
% be made (ie, we are at a minimum, or so close that due to numerical problems,
% we cannot get any closer). If the function terminates within a few
% iterations, it could be an indication that the function value and derivatives
% are not consistent (ie, there may be a bug in the implementation of your "f"
% function). The function returns the found solution "X", a vector of function
% values "fX" indicating the progress made and "i" the number of iterations
% (line searches or function evaluations, depending on the sign of "length")
% used.
%
% Usage: [X, fX, i] = minimize(X, f, length, P1, P2, P3, P4, P5)
%
% See also: checkgrad 
%
% Copyright (C) 2001 by Carl Edward Rasmussen. Date 2001-07-18

RHO = 0.01;                            % a bunch of constants for line searches
SIG = 0.5;       % RHO and SIG are the constants in the Wolfe-Powell conditions
INT = 0.1;    % don't reevaluate within 0.1 of the limit of the current bracket
EXT = 3.0;                    % extrapolate maximum 3 times the current bracket
MAX = 20;                         % max 20 function evaluations per line search
RATIO = 100;                                      % maximum allowed slope ratio

argstr = [f, '(X'];                      % compose string used to call function
for i = 1:(nargin - 3)
  argstr = [argstr, ',P', int2str(i)];
end
argstr = [argstr, ')'];

ITE = 0;

if length>0, S=['Linesearch']; else S=['Function evaluation']; end 

i = 0;                                            % zero the run length counter
ls_failed = 0;                             % no previous line search has failed
fX = [];
XX = [];  
[f1 df1] = eval(argstr);                      % get function value and gradient
XX=vertcat(XX,[1,-f1]);  %by Russ, get first value  
i = i + (length<0);                                            % count epochs?!
s = -df1;                                        % search direction is steepest
d1 = -s'*s;                                                 % this is the slope
z1 = 1/(1-d1);                                      % initial step is 1/(|s|+1)

while i < abs(length)                                      % while not finished
  i = i + (length>0);                                      % count iterations?!

  X0 = X; f0 = f1; df0 = df1;                   % make a copy of current values
  X = X + z1*s;                                             % begin line search
  [f2 df2] = eval(argstr);
  i = i + (length<0);                                          % count epochs?!
  d2 = df2'*s;
  f3 = f1; d3 = d1; z3 = -z1;             % initialize point 3 equal to point 1
  if length>0, M = MAX; else M = min(MAX, -length-i); end
  success = 0; limit = -1;                     % initialize quanteties
  while 1
    while ((f2 > f1+z1*RHO*d1) | (d2 > -SIG*d1)) & (M > 0) 
      limit = z1;                                         % tighten the bracket
      if f2 > f1
        z2 = z3 - (0.5*d3*z3*z3)/(d3*z3+f2-f3);                 % quadratic fit
      else
        A = 6*(f2-f3)/z3+3*(d2+d3);                                 % cubic fit
        B = 3*(f3-f2)-z3*(d3+2*d2);
        z2 = (sqrt(B*B-A*d2*z3*z3)-B)/A;       % numerical error possible - ok!
      end
      if isnan(z2) | isinf(z2)
        z2 = z3/2;                  % if we had a numerical problem then bisect
      end
      z2 = max(min(z2, INT*z3),(1-INT)*z3);  % don't accept too close to limits
      z1 = z1 + z2;                                           % update the step
      X = X + z2*s;
      [f2 df2] = eval(argstr);
      M = M - 1; i = i + (length<0);                           % count epochs?!
      d2 = df2'*s;
      z3 = z3-z2;                    % z3 is now relative to the location of z2
    end
    if f2 > f1+z1*RHO*d1 | d2 > -SIG*d1
      break;                                                % this is a failure
    elseif d2 > SIG*d1
      success = 1; break;                                             % success
    elseif M == 0
      break;                                                          % failure
    end
    A = 6*(f2-f3)/z3+3*(d2+d3);                      % make cubic extrapolation
    B = 3*(f3-f2)-z3*(d3+2*d2);
    z2 = -d2*z3*z3/(B+sqrt(B*B-A*d2*z3*z3));        % num. error possible - ok!
    if ~isreal(z2) | isnan(z2) | isinf(z2) | z2 < 0   % num prob or wrong sign?
      if limit < -0.5                               % if we have no upper limit
        z2 = z1 * (EXT-1);                 % the extrapolate the maximum amount
      else
        z2 = (limit-z1)/2;                                   % otherwise bisect
      end
    elseif (limit > -0.5) & (z2+z1 > limit)          % extraplation beyond max?
      z2 = (limit-z1)/2;                                               % bisect
    elseif (limit < -0.5) & (z2+z1 > z1*EXT)       % extrapolation beyond limit
      z2 = z1*(EXT-1.0);                           % set to extrapolation limit
    elseif z2 < -z3*INT
      z2 = -z3*INT;
    elseif (limit > -0.5) & (z2 < (limit-z1)*(1.0-INT))   % too close to limit?
      z2 = (limit-z1)*(1.0-INT);
    end
    f3 = f2; d3 = d2; z3 = -z2;                  % set point 3 equal to point 2
    z1 = z1 + z2; X = X + z2*s;                      % update current estimates
    [f2 df2] = eval(argstr);
    M = M - 1; i = i + (length<0);                             % count epochs?!
    d2 = df2'*s;
  end                                                      % end of line search

  if success          
      % if line search succeeded
    f1 = f2; fX = [fX' f1]';
    if mod(ITE,1) == 0
        fprintf('%s %6i;  Value %4.6e\r', S, i, f1);
        
    end
    ITE = ITE + 1;
    XX=vertcat(XX,[i,-f1]); %minus here for our purpuses only  
    s = (df2'*df2-df1'*df2)/(df1'*df1)*s - df2;      % Polack-Ribiere direction
    tmp = df1; df1 = df2; df2 = tmp;                         % swap derivatives
    d2 = df1'*s;
    if d2 > 0                                      % new slope must be negative
      s = -df1;                              % otherwise use steepest direction
      d2 = -s'*s;    
    end
    z1 = z1 * min(RATIO, d1/(d2-realmin));          % slope ratio but max RATIO
    d1 = d2;
    ls_failed = 0;                              % this line search did not fail
  else
    X = X0; f1 = f0; df1 = df0;  % restore point from before failed line search
    if ls_failed | i > abs(length)          % line search failed twice in a row
      break;                             % or we ran out of time, so we give up
    end
    tmp = df1; df1 = df2; df2 = tmp;                         % swap derivatives
    s = -df1;                                                    % try steepest
    d1 = -s'*s;
    z1 = 1/(1-d1);                     
    ls_failed = 1;                                    % this line search failed
  end
end
fprintf('\r');