Resources


Database Credentialed Access

NCH Sleep DataBank: A Large Collection of Real-world Pediatric Sleep Studies with Longitudinal Clinical Data

Harlin Lee, Boyue Li, Yungui Huang, Yuejie Chi, Simon Lin

The NCH Sleep DataBank includes 3,984 pediatric sleep studies on 3,673 unique patients conducted at Nationwide Children's Hospital between 2017 and 2019. It contains polysomnography (PSG), clinical annotations, and longitudinal clinical data.

eeg ehr polysomnography pediatrics clinical decision support sleep study electronic health records ecg sleep disorders

Published: Oct. 27, 2021. Version: 3.1.0

Software Open Access

Lightweight 12-lead ECG viewer for MATLAB

Erick Andres Perez Alday, Larisa Tereshchenko

Clinical Viewer of raw digital 12-lead ECG file (ECG file in .txt format).

clinical 12-lead ecg routine clinical ecg viewer electrocardiogram

Published: Aug. 30, 2021. Version: 1.0.0

Database Restricted Access

Upper body thermal images and associated clinical data from a pilot cohort study of COVID-19

Jose Tamez-Peña, Adam Yala, Servando Cardona, Rocio Ortiz-Lopez, Victor Trevino

Thermal videos of people with positive and negative COVID-19 tests.

covid-19 thermal videos sars-cov-2 clinical symptoms

Published: Aug. 16, 2021. Version: 1.1

Database Open Access

MIMIC-IV demo data in the OMOP Common Data Model

Michael Kallfelz, Anna Tsvetkova, Tom Pollard, Manlik Kwong, Gigi Lipori, Vojtech Huser, Jeffrey Osborn, Sicheng Hao, Andrew Williams

Preliminary work to transform a MIMIC-IV demo dataset to the OMOP Common Data Model

omop common data model

Published: June 21, 2021. Version: 0.9

Database Credentialed Access

CLIP: A Dataset for Extracting Action Items for Physicians from Hospital Discharge Notes

James Mullenbach, Yada Pruksachatkun, Sean Adler, Jennifer Seale, Jordan Swartz, T Greg McKelvey, Yi Yang, David Sontag

Clinical action items annotated over MIMIC-III. 718 discharge summaries are labeled at a sentence- and character-level with multiple action labels including Appointment, Lab, Procedure, Medication, Imaging, Patient Instructions, and Other.

Published: June 21, 2021. Version: 1.0.0

Model Credentialed Access

Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes

Eric Lehman, Sarthak Jain, Karl Pichotta, Yoav Goldberg, Byron Wallace

We explore recovering sensitive info from BERT trained over non-deidentified EHR. We make our models and data available to further facilitate research.

Published: April 28, 2021. Version: 1.0.0

Database Open Access

Effect of 24-hour sleep deprivation on cerebral hemodynamics and cognitive performance

Peter Mukli, Andriy Yabluchanskiy, Tamas Csipo

We assessed the impact of 24-hour sleep deprivation on the global properties of frontal lobe functional networks and on cognitive performance. fNIRS measurements were carried out in the resting state and in response to a finger-tapping paradigm.

Published: April 26, 2021. Version: 1.0.0

Database Open Access

Mental workload during n-back task captured by TransCranial Doppler (TCD) sonography and functional Near-Infrared Spectroscopy (fNIRS) monitoring

Peter Mukli, Andriy Yabluchanskiy, Tamas Csipo

Functional near-infrared spectroscopy and transcranial doppler sonography were used to measure changes in cerebral hemodynamics during cognitive stimulation.

Published: April 21, 2021. Version: 1.0

Database Credentialed Access

Curated Data for Describing Blood Glucose Management in the Intensive Care Unit

Aldo Robles Arévalo, Roselyn Mateo-Collado, Leo Anthony Celi

The data subsets consist of time series files that includes all the curated entries of glucose readings and insulin inputs from MIMIC-III database.

insulin replacement therapy glycemic control critical care

Published: April 19, 2021. Version: 1.0.1

Database Credentialed Access

Annotated Question-Answer Pairs for Clinical Notes in the MIMIC-III Database

Xiang Yue, Xinliang Frederick Zhang, Huan Sun

Annotated Question Answering Pairs for Clinical Notes in the MIMIC-III Database

clinical question answering clinical nlp clinical reading comprehension

Published: Jan. 15, 2021. Version: 1.0.0