Resources


Challenge Credentialed Access

Discharge Me: BioNLP ACL'24 Shared Task on Streamlining Discharge Documentation

Justin Xu

Data for the "Discharge Me!" Shared Task on Streamlining Discharge Documentation for BioNLP ACL'24

generation bionlp acl discharge summary

Published: April 12, 2024. Version: 1.3

Database Credentialed Access

EHRNoteQA: A Patient-Specific Question Answering Benchmark for Evaluating Large Language Models in Clinical Settings

Sunjun Kweon, Jiyoun Kim, Heeyoung Kwak, Dongchul Cha, Hangyul Yoon, Kwang Hyun Kim, Seunghyun Won, Edward Choi

A patient-specific question answering benchmark tailored for evaluating Large Language Models (LLMs) in clinical environments

Published: April 3, 2024. Version: 1.0.0

Database Credentialed Access

RaDialog Instruct Dataset

Chantal Pellegrini, Ege Özsoy, Benjamin Busam, Nassir Navab, Matthias Keicher

Image-based instruct data for Chest X-Ray understanding and analysis.

radiology report generation large vision-language models medical image understaning radiology assistant radiology chatbot

Published: March 25, 2024. Version: 1.0.0

Database Open Access

PADS - Parkinsons Disease Smartwatch dataset

Julian Varghese, Alexander Brenner, Lucas Plagwitz, Catharina van Alen, Michael Fujarski, Tobias Warnecke

The PADS dataset contains smartwatch-based records from interactive neurological assessments of Parkinsons disease patients, differential diagnoses and healthy controls. The data is complemented with non-motor symptoms and medical history information

wearables movement disorders parkinsons disease

Published: March 25, 2024. Version: 1.0.0

Database Open Access

ScientISST MOVE: Annotated Wearable Multimodal Biosignals recorded during Everyday Life Activities in Naturalistic Environments

João Areias Saraiva, Mariana Abreu, Ana Sofia Carmo, Hugo Plácido da Silva, Ana Fred

Multimodal (ECG, EMG, EDA, PPG, TEMP, ACC) biosignal dataset of everyday activities. Created with 3 wearable devices based on ScientISST Sense and Empatica E4.

multimodal wearable greet lift uncontrolled environments run jump gesticulate walk

Published: March 25, 2024. Version: 1.0.1

Model Credentialed Access

Asclepius-R : Clinical Large Language Model Built On MIMIC-III Discharge Summaries

Sunjun Kweon, Junu Kim, Jiyoun Kim, Sujeong Im, Eunbyeol Cho, Seongsu Bae, Jungwoo Oh, Gyubok Lee, Jong Hak Moon, Seng Chan You, Seungjin Baek, Chang Hoon Han, Yoon Bin Jung, Yohan Jo, Edward Choi

Asclepius: Publicly Available Clinical Large Language Models with Synthetic Clinical Notes Asclepius-R: A instruction-finetuned large language model with MIMIC-III clinical notes

clinical notes large language model synthetic clinical notes synthetic notes asclepius open-source llm clinical llm

Published: March 25, 2024. Version: 1.1.0

Database Open Access

Respiratory and heart rate monitoring dataset from aeration study

Ella Frances Sophia Guy, Isaac Flett, Jaimey Anne Clifton, Trudy Caljé-van der Klei, Rongqing Chen, Jennifer Knopp, Knut Moeller, James Geoffrey Chase

Respiratory and cardiovascular data collected from 20 subjects. Pressure, flow, aeration, and heart-rate data were collected during trials which included resting breathing, CPAP at varied PEEP settings, breath-holds, and forced expiratory manoeuvres.

Published: March 20, 2024. Version: 1.0.0

Database Restricted Access

CheXchoNet: A Chest Radiograph Dataset with Gold Standard Echocardiography Labels

Pierre Elias, Shreyas Bhave

Early detection of heart failure is vital for improving outcomes. The dataset contains 71,589 CXRs paired with gold standard labels from echocardiograms to enable the training of models to detect pathologies indicative of early stage heart failure.

heart failure chest x-rays deep learning early detection cardiac structural abnormalties

Published: March 20, 2024. Version: 1.0.0

Database Credentialed Access

MIMIC-CXR-JPG - chest radiographs with structured labels

Alistair Johnson, Matthew Lungren, Yifan Peng, Zhiyong Lu, Roger Mark, Seth Berkowitz, Steven Horng

Chest x-rays in JPG format with structured labels derived from the associated radiology report.

mimic computer vision chest x-ray radiology deep learning

Published: March 12, 2024. Version: 2.1.0

Database Open Access

CheXmask Database: a large-scale dataset of anatomical segmentation masks for chest x-ray images

Nicolas Gaggion, Candelaria Mosquera, Martina Aineseder, Lucas Mansilla, Diego Milone, Enzo Ferrante

CheXmask Database is a 657,566 uniformly annotated chest radiographs with segmentation masks. Images were segmented using HybridGNet, with automatic quality control indicated by RCA scores.

chest x-ray segmentation medical image segmentation automatic quality assesment

Published: March 1, 2024. Version: 0.4